Welcome to PHAROST Documentation

PHAROST is a deep transfer learning framework for pharmacogenomic outcome prediction in spatial transcriptomics.

Getting Started

• Environment Setup
• Datasets
  • Preprocessed Data
  • Public Available Raw Data
• Tutorial 1 — Breast Cancer (Xenium Rep1)
  • Model Training
  • Downstream Analysis
• Tutorial 2 — NSCLC (CosMx)
  • Model Training
  • Downstream Analysis

API Reference

• PHAROST API Reference
  • Model Modules
  • Analysis Modules pharost.analysis

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